Package: htrSPRanalysis 0.1.0
htrSPRanalysis: Analysis of Surface Plasmon Resonance Data
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
Authors:
htrSPRanalysis_0.1.0.tar.gz
htrSPRanalysis_0.1.0.zip(r-4.5)htrSPRanalysis_0.1.0.zip(r-4.4)htrSPRanalysis_0.1.0.zip(r-4.3)
htrSPRanalysis_0.1.0.tgz(r-4.4-any)htrSPRanalysis_0.1.0.tgz(r-4.3-any)
htrSPRanalysis_0.1.0.tar.gz(r-4.5-noble)htrSPRanalysis_0.1.0.tar.gz(r-4.4-noble)
htrSPRanalysis_0.1.0.tgz(r-4.4-emscripten)htrSPRanalysis_0.1.0.tgz(r-4.3-emscripten)
htrSPRanalysis.pdf |htrSPRanalysis.html✨
htrSPRanalysis/json (API)
# Install 'htrSPRanalysis' in R: |
install.packages('htrSPRanalysis', repos = c('https://janice-mccarthy.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:c5fc644a07. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win | OK | Oct 27 2024 |
R-4.5-linux | OK | Oct 27 2024 |
R-4.4-win | OK | Oct 27 2024 |
R-4.4-mac | OK | Oct 27 2024 |
R-4.3-win | OK | Oct 27 2024 |
R-4.3-mac | OK | Oct 27 2024 |
Exports:%>%create_csvcreate_pdfget_fitsget_fitted_plotsget_plots_before_baselineget_rc_plotsprocess_input
Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmeopenxlsxpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrzipzoo