Package: htrSPRanalysis 0.1.0

htrSPRanalysis: Analysis of Surface Plasmon Resonance Data

Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.

Authors:Janice McCarthy Developer [aut, cre, cph], Kan Li Dev [aut], S. Moses Dennison [aut], Georgia D. Tomaras [aut]

htrSPRanalysis_0.1.0.tar.gz
htrSPRanalysis_0.1.0.zip(r-4.5)htrSPRanalysis_0.1.0.zip(r-4.4)htrSPRanalysis_0.1.0.zip(r-4.3)
htrSPRanalysis_0.1.0.tgz(r-4.4-any)htrSPRanalysis_0.1.0.tgz(r-4.3-any)
htrSPRanalysis_0.1.0.tar.gz(r-4.5-noble)htrSPRanalysis_0.1.0.tar.gz(r-4.4-noble)
htrSPRanalysis_0.1.0.tgz(r-4.4-emscripten)htrSPRanalysis_0.1.0.tgz(r-4.3-emscripten)
htrSPRanalysis.pdf |htrSPRanalysis.html
htrSPRanalysis/json (API)

# Install 'htrSPRanalysis' in R:
install.packages('htrSPRanalysis', repos = c('https://janice-mccarthy.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 2 scripts 134 downloads 8 exports 56 dependencies

Last updated 2 months agofrom:c5fc644a07. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-winOKOct 27 2024
R-4.5-linuxOKOct 27 2024
R-4.4-winOKOct 27 2024
R-4.4-macOKOct 27 2024
R-4.3-winOKOct 27 2024
R-4.3-macOKOct 27 2024

Exports:%>%create_csvcreate_pdfget_fitsget_fitted_plotsget_plots_before_baselineget_rc_plotsprocess_input

Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmeopenxlsxpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrzipzoo

Introduction to htrSPRanalysis

Rendered fromhtrSPRanalysis-vignette.Rmdusingknitr::knitron Oct 27 2024.

Last update: 2024-08-27
Started: 2024-08-27