Package: htrSPRanalysis 0.1.3
htrSPRanalysis: Analysis of Surface Plasmon Resonance Data
Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
Authors:
htrSPRanalysis_0.1.3.tar.gz
htrSPRanalysis_0.1.3.zip(r-4.7)htrSPRanalysis_0.1.3.zip(r-4.6)htrSPRanalysis_0.1.3.zip(r-4.5)
htrSPRanalysis_0.1.3.tgz(r-4.6-any)htrSPRanalysis_0.1.3.tgz(r-4.5-any)
htrSPRanalysis_0.1.3.tar.gz(r-4.7-any)htrSPRanalysis_0.1.3.tar.gz(r-4.6-any)
htrSPRanalysis_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
htrSPRanalysis/json (API)
| # Install 'htrSPRanalysis' in R: |
| install.packages('htrSPRanalysis', repos = c('https://janice-mccarthy.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:220aa4b6ef. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 134 | ||
| source / vignettes | OK | 241 | ||
| linux-release-x86_64 | OK | 139 | ||
| macos-release-arm64 | OK | 209 | ||
| macos-oldrel-arm64 | OK | 171 | ||
| windows-devel | OK | 129 | ||
| windows-release | OK | 76 | ||
| windows-oldrel | OK | 150 | ||
| wasm-release | OK | 118 |
Exports:%>%create_csvcreate_pdfget_fitsget_fitted_plotsget_plots_before_baselineget_rc_plotsprocess_input
Dependencies:bitbit64cellrangerclicliprcpp11crayondplyrfarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrminpack.lmopenxlsxpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerRcppreadrreadxlrematchrlangS7scalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrzipzoo
